#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01047/HG01047.cram --algo AlignmentStat 1000G/HG01047/QCmetrics/HG01047.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368444855	368444855	1.000000	0	368367241	0.999789	54742938997	347179659	51805314340	51104036165	0.000000	0.003636	0.002981	0.000231	150.000000	367297106	0.997095	0	0.500525	0.005948	0.000000	
SECOND_OF_PAIR	368444855	368444855	1.000000	0	367338712	0.996998	54271667894	343869328	51199837947	50139824608	0.000000	0.004674	0.003918	0.000234	150.000000	367297106	0.999887	0	0.501088	0.006088	0.000000	
PAIR	736889710	736889710	1.000000	0	735705953	0.998394	109014606891	691048987	103005152287	101243860773	0.000000	0.004153	0.003447	0.000233	150.000000	734594212	0.998489	0	0.500806	0.006018	0.000000