#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01048/HG01048.cram --algo AlignmentStat 1000G/HG01048/QCmetrics/HG01048.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	479567121	479567121	1.000000	0	479477382	0.999813	71276543963	450121720	67177762192	66292923324	0.000000	0.003660	0.002989	0.000239	150.000000	478035159	0.996992	0	0.500522	0.005948	0.000000	
SECOND_OF_PAIR	479567121	479567121	1.000000	0	478083823	0.996907	70603895747	446111553	66355764874	64997031593	0.000000	0.005826	0.005074	0.000242	150.000000	478035159	0.999898	0	0.500942	0.006316	0.000000	
PAIR	959134242	959134242	1.000000	0	957561205	0.998360	141880439710	896233273	133533527066	131289954917	0.000000	0.004738	0.004025	0.000241	150.000000	956070318	0.998443	0	0.500732	0.006132	0.000000