#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01052/HG01052.cram --algo AlignmentStat 1000G/HG01052/QCmetrics/HG01052.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	390377073	390377073	1.000000	0	390236110	0.999639	57983538572	367885887	54865401550	53807433233	0.000000	0.004313	0.003750	0.000235	150.000000	389181675	0.997298	0	0.500553	0.007541	0.000000	
SECOND_OF_PAIR	390377073	390377073	1.000000	0	389243470	0.997096	57505145275	364399915	54221992209	52940842406	0.000000	0.004999	0.004342	0.000240	150.000000	389181675	0.999841	0	0.501100	0.007921	0.000000	
PAIR	780754146	780754146	1.000000	0	779479580	0.998368	115488683847	732285802	109087393759	106748275639	0.000000	0.004654	0.004044	0.000237	150.000000	778363350	0.998568	0	0.500826	0.007731	0.000000