#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01061/HG01061.cram --algo AlignmentStat 1000G/HG01061/QCmetrics/HG01061.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375914555	375914555	1.000000	0	375831933	0.999780	55827591757	353893242	52780796852	51928461971	0.000000	0.003853	0.003246	0.000235	150.000000	374831132	0.997337	0	0.500693	0.007179	0.000003	
SECOND_OF_PAIR	375914555	375914555	1.000000	0	374879592	0.997247	55434021382	350868982	52253924631	51104760394	0.000000	0.004771	0.004066	0.000239	150.000000	374831132	0.999871	0	0.501039	0.007429	0.000000	
PAIR	751829110	751829110	1.000000	0	750711525	0.998514	111261613139	704762224	105034721483	103033222365	0.000000	0.004310	0.003654	0.000237	150.000000	749662264	0.998602	0	0.500866	0.007304	0.000001