#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01066/HG01066.cram --algo AlignmentStat 1000G/HG01066/QCmetrics/HG01066.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387962983	387962983	1.000000	0	387838653	0.999680	57612157742	365304643	54449656169	53397245075	0.000000	0.004410	0.003814	0.000227	150.000000	386882242	0.997534	0	0.500554	0.007823	0.000000	
SECOND_OF_PAIR	387962983	387962983	1.000000	0	386950619	0.997391	57222447427	362217319	53915340703	52747361318	0.000000	0.004796	0.004116	0.000235	150.000000	386882242	0.999823	0	0.500881	0.008151	0.000000	
PAIR	775925966	775925966	1.000000	0	774789272	0.998535	114834605169	727521962	108364996872	106144606393	0.000000	0.004603	0.003964	0.000231	150.000000	773764484	0.998677	0	0.500717	0.007987	0.000000