#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01070/HG01070.cram --algo AlignmentStat 1000G/HG01070/QCmetrics/HG01070.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	356656840	356656840	1.000000	0	356573237	0.999766	52979116803	337500043	50307096867	49437380110	0.000000	0.003959	0.003465	0.000223	150.000000	355827107	0.997907	0	0.500532	0.006306	0.000000	
SECOND_OF_PAIR	356656840	356656840	1.000000	0	355888607	0.997846	52752734155	334889950	49944994972	49162460560	0.000000	0.003945	0.003374	0.000231	150.000000	355827107	0.999827	0	0.500902	0.006384	0.000000	
PAIR	713313680	713313680	1.000000	0	712461844	0.998806	105731850958	672389993	100252091839	98599840670	0.000000	0.003952	0.003419	0.000227	150.000000	711654214	0.998866	0	0.500717	0.006345	0.000000