#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01083/HG01083.cram --algo AlignmentStat 1000G/HG01083/QCmetrics/HG01083.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	433896164	433896164	1.000000	0	433754121	0.999673	64477175318	410513163	61230455589	60293003944	0.000000	0.003643	0.003112	0.000225	150.000000	432850609	0.997917	0	0.500558	0.007876	0.000000	
SECOND_OF_PAIR	433896164	433896164	1.000000	0	432913399	0.997735	63932578543	407259649	60537856490	59278527009	0.000000	0.004540	0.003929	0.000230	150.000000	432850609	0.999855	0	0.500872	0.008360	0.000000	
PAIR	867792328	867792328	1.000000	0	866667520	0.998704	128409753861	817772812	121768312079	119571530953	0.000000	0.004089	0.003518	0.000227	150.000000	865701218	0.998885	0	0.500715	0.008118	0.000000