#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01086/HG01086.cram --algo AlignmentStat 1000G/HG01086/QCmetrics/HG01086.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	374390023	374390023	1.000000	0	374299848	0.999759	55606237571	353604350	52752611495	51956753464	0.000000	0.003834	0.003203	0.000239	150.000000	373454076	0.997740	0	0.500556	0.006437	0.000000	
SECOND_OF_PAIR	374390023	374390023	1.000000	0	373503185	0.997631	55257519942	350495901	52250226103	51381481830	0.000000	0.004128	0.003405	0.000245	150.000000	373454076	0.999869	0	0.501002	0.006577	0.000000	
PAIR	748780046	748780046	1.000000	0	747803033	0.998695	110863757513	704100251	105002837598	103338235294	0.000000	0.003981	0.003303	0.000242	150.000000	746908152	0.998803	0	0.500779	0.006507	0.000000