#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01098/HG01098.cram --algo AlignmentStat 1000G/HG01098/QCmetrics/HG01098.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379617511	379617511	1.000000	0	379448588	0.999555	56399683506	358220127	53431741323	52407796370	0.000000	0.004300	0.003747	0.000227	150.000000	377974182	0.996114	0	0.500492	0.006071	0.000000	
SECOND_OF_PAIR	379617511	379617511	1.000000	0	378041201	0.995848	55805854764	354080719	52666728587	51343513754	0.000000	0.006102	0.005446	0.000233	150.000000	377974182	0.999823	0	0.501424	0.006412	0.000000	
PAIR	759235022	759235022	1.000000	0	757489789	0.997701	112205538270	712300846	106098469910	103751310124	0.000000	0.005196	0.004591	0.000230	150.000000	755948364	0.997965	0	0.500957	0.006242	0.000000