#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01104/HG01104.cram --algo AlignmentStat 1000G/HG01104/QCmetrics/HG01104.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	344021466	344021466	1.000000	0	343947248	0.999784	51097346819	323058873	48182895652	47491831628	0.000000	0.003732	0.003051	0.000238	150.000000	343271755	0.998036	0	0.500436	0.007444	0.000000	
SECOND_OF_PAIR	344021466	344021466	1.000000	0	343318756	0.997957	50825709066	320658712	47796204180	46944638554	0.000000	0.004229	0.003471	0.000243	150.000000	343271755	0.999863	0	0.500852	0.007643	0.000000	
PAIR	688042932	688042932	1.000000	0	687266004	0.998871	101923055885	643717585	95979099832	94436470182	0.000000	0.003980	0.003260	0.000240	150.000000	686543510	0.998949	0	0.500644	0.007544	0.000000