#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01112/HG01112.cram --algo AlignmentStat 1000G/HG01112/QCmetrics/HG01112.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368507094	368507094	1.000000	0	368428589	0.999787	54741610109	347898696	51890866116	51229473881	0.000000	0.003527	0.002902	0.000234	150.000000	367719023	0.998074	0	0.500406	0.006934	0.000000	
SECOND_OF_PAIR	368507094	368507094	1.000000	0	367767995	0.997994	54460218592	345447700	51487919207	50582809504	0.000000	0.004119	0.003413	0.000238	150.000000	367719023	0.999867	0	0.501013	0.007136	0.000000	
PAIR	737014188	737014188	1.000000	0	736196584	0.998891	109201828701	693346396	103378785323	101812283385	0.000000	0.003822	0.003156	0.000236	150.000000	735438046	0.998970	0	0.500709	0.007035	0.000000