#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01119/HG01119.cram --algo AlignmentStat 1000G/HG01119/QCmetrics/HG01119.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	370684814	370684814	1.000000	0	370610914	0.999801	55066084739	349552737	52140002765	51460553590	0.000000	0.003508	0.002913	0.000236	150.000000	369963445	0.998253	0	0.500519	0.005958	0.000000	
SECOND_OF_PAIR	370684814	370684814	1.000000	0	370012225	0.998186	54812236619	347325340	51782964295	50938051584	0.000000	0.003902	0.003237	0.000239	150.000000	369963445	0.999868	0	0.500714	0.006079	0.000000	
PAIR	741369628	741369628	1.000000	0	740623139	0.998993	109878321358	696878077	103922967060	102398605174	0.000000	0.003705	0.003074	0.000238	150.000000	739926890	0.999060	0	0.500616	0.006019	0.000000