#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01140/HG01140.cram --algo AlignmentStat 1000G/HG01140/QCmetrics/HG01140.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	409951740	409951740	1.000000	0	409830875	0.999705	60882509736	387367556	57746827132	56726642464	0.000000	0.004019	0.003483	0.000220	150.000000	408825718	0.997547	0	0.500582	0.005984	0.000000	
SECOND_OF_PAIR	409951740	409951740	1.000000	0	408892379	0.997416	60532991144	383970033	57232647935	56185031102	0.000000	0.004188	0.003560	0.000227	150.000000	408825718	0.999837	0	0.501022	0.006073	0.000000	
PAIR	819903480	819903480	1.000000	0	818723254	0.998561	121415500880	771337589	114979475067	112911673566	0.000000	0.004103	0.003522	0.000223	150.000000	817651436	0.998691	0	0.500802	0.006029	0.000000