#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01161/HG01161.cram --algo AlignmentStat 1000G/HG01161/QCmetrics/HG01161.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	370430601	370430601	1.000000	0	370358468	0.999805	55038180416	347448388	51825022086	51115655874	0.000000	0.003831	0.003122	0.000237	150.000000	369666076	0.998130	0	0.500547	0.007023	0.000000	
SECOND_OF_PAIR	370430601	370430601	1.000000	0	369716567	0.998072	54590981089	344798499	51267349572	50320262595	0.000000	0.004737	0.003961	0.000246	150.000000	369666076	0.999863	0	0.500451	0.007724	0.000000	
PAIR	740861202	740861202	1.000000	0	740075035	0.998939	109629161505	692246887	103092371658	101435918469	0.000000	0.004282	0.003539	0.000242	150.000000	739332152	0.998996	0	0.500499	0.007373	0.000000