#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01173/HG01173.cram --algo AlignmentStat 1000G/HG01173/QCmetrics/HG01173.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	354875152	354875152	1.000000	0	354783892	0.999743	52680109087	334424270	49846249098	49026893965	0.000000	0.004043	0.003415	0.000230	150.000000	353952712	0.997657	0	0.500385	0.006303	0.000000	
SECOND_OF_PAIR	354875152	354875152	1.000000	0	354014177	0.997574	52406231605	331507587	49423708476	48613255354	0.000000	0.004148	0.003430	0.000236	150.000000	353952712	0.999826	0	0.501168	0.006407	0.000000	
PAIR	709750304	709750304	1.000000	0	708798069	0.998658	105086340692	665931857	99269957574	97640149319	0.000000	0.004095	0.003422	0.000233	150.000000	707905424	0.998741	0	0.500776	0.006355	0.000000