#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01174/HG01174.cram --algo AlignmentStat 1000G/HG01174/QCmetrics/HG01174.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	374478800	374478800	1.000000	0	374408534	0.999812	55662074481	353738191	52786143918	51996984744	0.000000	0.003715	0.003122	0.000232	150.000000	373583283	0.997796	0	0.500589	0.006812	0.000000	
SECOND_OF_PAIR	374478800	374478800	1.000000	0	373622676	0.997714	55301304837	351072783	52310736001	51233094246	0.000000	0.004543	0.003870	0.000234	150.000000	373583283	0.999895	0	0.500870	0.007055	0.000000	
PAIR	748957600	748957600	1.000000	0	748031210	0.998763	110963379318	704810974	105096879919	103230078990	0.000000	0.004127	0.003495	0.000233	150.000000	747166566	0.998844	0	0.500730	0.006934	0.000000