#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01176/HG01176.cram --algo AlignmentStat 1000G/HG01176/QCmetrics/HG01176.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	493954267	493954267	1.000000	0	493830401	0.999749	73372831364	464186785	69235938696	68114808222	0.000000	0.004052	0.003401	0.000226	150.000000	492664778	0.997640	0	0.500554	0.006119	0.000000	
SECOND_OF_PAIR	493954267	493954267	1.000000	0	492736020	0.997534	72884999247	460086466	68559020708	67285670699	0.000000	0.004458	0.003717	0.000232	150.000000	492664778	0.999855	0	0.500752	0.006270	0.000000	
PAIR	987908534	987908534	1.000000	0	986566421	0.998641	146257830611	924273251	137794959404	135400478921	0.000000	0.004254	0.003558	0.000229	150.000000	985329556	0.998746	0	0.500653	0.006195	0.000000