#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01188/HG01188.cram --algo AlignmentStat 1000G/HG01188/QCmetrics/HG01188.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	368278504	368278504	1.000000	0	368178593	0.999729	54756681028	347922631	51912958687	51150071372	0.000000	0.003699	0.003194	0.000226	150.000000	367373963	0.997815	0	0.500607	0.005975	0.000000	
SECOND_OF_PAIR	368278504	368278504	1.000000	0	367423546	0.997679	54422426842	344970419	51435701564	50609244303	0.000000	0.003978	0.003381	0.000231	150.000000	367373963	0.999865	0	0.500821	0.006081	0.000000	
PAIR	736557008	736557008	1.000000	0	735602139	0.998704	109179107870	692893050	103348660251	101759315675	0.000000	0.003838	0.003287	0.000228	150.000000	734747926	0.998839	0	0.500714	0.006028	0.000000