#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01247/HG01247.cram --algo AlignmentStat 1000G/HG01247/QCmetrics/HG01247.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367793951	367793951	1.000000	0	367659911	0.999636	54626414316	344804318	51441681080	50698327493	0.000000	0.003923	0.003210	0.000242	150.000000	366883857	0.997889	0	0.500431	0.006935	0.000000	
SECOND_OF_PAIR	367793951	367793951	1.000000	0	366938404	0.997674	54285829071	342204081	50986506637	49994426235	0.000000	0.004642	0.003846	0.000245	150.000000	366883857	0.999851	0	0.500810	0.007136	0.000000	
PAIR	735587902	735587902	1.000000	0	734598315	0.998655	108912243387	687008399	102428187717	100692753728	0.000000	0.004281	0.003527	0.000243	150.000000	733767714	0.998869	0	0.500620	0.007035	0.000000