#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01254/HG01254.cram --algo AlignmentStat 1000G/HG01254/QCmetrics/HG01254.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	425388918	425388918	1.000000	0	425244073	0.999659	63144852643	402325881	59963028711	58801548680	0.000000	0.004380	0.003847	0.000223	150.000000	424180316	0.997498	0	0.500616	0.005816	0.000000	
SECOND_OF_PAIR	425388918	425388918	1.000000	0	424260362	0.997347	62788022636	399271240	59471882986	58098439644	0.000000	0.004910	0.004295	0.000228	150.000000	424180316	0.999811	0	0.500757	0.005911	0.000000	
PAIR	850777836	850777836	1.000000	0	849504435	0.998503	125932875279	801597121	119434911697	116899988324	0.000000	0.004644	0.004070	0.000226	150.000000	848360632	0.998654	0	0.500687	0.005863	0.000000