#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01259/HG01259.cram --algo AlignmentStat 1000G/HG01259/QCmetrics/HG01259.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377293697	377293697	1.000000	0	377175304	0.999686	56023841294	355188381	52969039090	52024316166	0.000000	0.004339	0.003686	0.000223	150.000000	376052293	0.997023	0	0.500531	0.005992	0.000000	
SECOND_OF_PAIR	377293697	377293697	1.000000	0	376108920	0.996860	55568908170	351850012	52373422747	51143209592	0.000000	0.005299	0.004544	0.000227	150.000000	376052293	0.999849	0	0.501174	0.006131	0.000000	
PAIR	754587394	754587394	1.000000	0	753284224	0.998273	111592749464	707038393	105342461837	103167525758	0.000000	0.004817	0.004113	0.000225	150.000000	752104586	0.998434	0	0.500852	0.006062	0.000000