#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01272/HG01272.cram --algo AlignmentStat 1000G/HG01272/QCmetrics/HG01272.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371900383	371900383	1.000000	0	371796587	0.999721	55279163598	352283756	52561472985	51784848316	0.000000	0.003711	0.003183	0.000234	150.000000	370953270	0.997732	0	0.500581	0.006372	0.000000	
SECOND_OF_PAIR	371900383	371900383	1.000000	0	371002772	0.997586	54919036337	348906819	52025382793	51221287517	0.000000	0.003921	0.003293	0.000242	150.000000	370953270	0.999867	0	0.501043	0.006478	0.000000	
PAIR	743800766	743800766	1.000000	0	742799359	0.998654	110198199935	701190575	104586855778	103006135833	0.000000	0.003816	0.003238	0.000238	150.000000	741906540	0.998798	0	0.500812	0.006425	0.000000