#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01312/HG01312.cram --algo AlignmentStat 1000G/HG01312/QCmetrics/HG01312.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377325677	377325677	1.000000	0	377239230	0.999771	56098024653	357301435	53321630891	52523936564	0.000000	0.003641	0.003088	0.000229	150.000000	376222084	0.997304	0	0.500645	0.006010	0.000000	
SECOND_OF_PAIR	377325677	377325677	1.000000	0	376264284	0.997187	55666471694	354039500	52742082460	51519795679	0.000000	0.004804	0.004148	0.000232	150.000000	376222084	0.999888	0	0.501198	0.006168	0.000000	
PAIR	754651354	754651354	1.000000	0	753503514	0.998479	111764496347	711340935	106063713351	104043732243	0.000000	0.004220	0.003615	0.000230	150.000000	752444168	0.998594	0	0.500921	0.006089	0.000000