#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01326/HG01326.cram --algo AlignmentStat 1000G/HG01326/QCmetrics/HG01326.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382214630	382214630	1.000000	0	382044312	0.999554	56710171070	360773473	53772299174	52814322077	0.000000	0.004097	0.003517	0.000227	150.000000	381085957	0.997492	0	0.500592	0.005910	0.000000	
SECOND_OF_PAIR	382214630	382214630	1.000000	0	381158847	0.997238	56376033141	357515642	53282847990	52345470496	0.000000	0.004130	0.003460	0.000233	150.000000	381085957	0.999809	0	0.500849	0.005996	0.000000	
PAIR	764429260	764429260	1.000000	0	763203159	0.998396	113086204211	718289115	107055147164	105159792573	0.000000	0.004113	0.003488	0.000230	150.000000	762171914	0.998649	0	0.500720	0.005953	0.000000