#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01334/HG01334.cram --algo AlignmentStat 1000G/HG01334/QCmetrics/HG01334.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	376862780	376862780	1.000000	0	376758059	0.999722	56003649652	355279819	53003627349	52213843502	0.000000	0.003832	0.003215	0.000227	150.000000	375846776	0.997581	0	0.500541	0.007197	0.000000	
SECOND_OF_PAIR	376862780	376862780	1.000000	0	375898633	0.997442	55615509853	351807044	52440969270	51573370840	0.000000	0.004161	0.003441	0.000234	150.000000	375846776	0.999862	0	0.501103	0.007358	0.000000	
PAIR	753725560	753725560	1.000000	0	752656692	0.998582	111619159505	707086863	105444596619	103787214342	0.000000	0.003996	0.003327	0.000230	150.000000	751693552	0.998720	0	0.500822	0.007277	0.000000