#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01356/HG01356.cram --algo AlignmentStat 1000G/HG01356/QCmetrics/HG01356.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	383270523	383270523	1.000000	0	383179015	0.999761	56944221522	359795418	53699979963	52991280630	0.000000	0.003784	0.003101	0.000240	150.000000	381885043	0.996623	0	0.500630	0.006363	0.000000	
SECOND_OF_PAIR	383270523	383270523	1.000000	0	381924484	0.996488	56308610901	356324955	52950989772	51895233236	0.000000	0.004874	0.004108	0.000242	150.000000	381885043	0.999897	0	0.500779	0.006755	0.000000	
PAIR	766541046	766541046	1.000000	0	765103499	0.998125	113252832423	716120373	106650969735	104886513866	0.000000	0.004326	0.003601	0.000241	150.000000	763770086	0.998257	0	0.500704	0.006559	0.000000