#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01357/HG01357.cram --algo AlignmentStat 1000G/HG01357/QCmetrics/HG01357.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	351318085	351318085	1.000000	0	351126952	0.999456	52131337650	332924414	49598244478	48206440992	0.000000	0.005427	0.004903	0.000217	150.000000	349925671	0.996579	0	0.500505	0.005990	0.000000	
SECOND_OF_PAIR	351318085	351318085	1.000000	0	350012216	0.996283	51740595370	329542382	49059307282	47509100938	0.000000	0.005979	0.005362	0.000224	150.000000	349925671	0.999753	0	0.501286	0.006114	0.000000	
PAIR	702636170	702636170	1.000000	0	701139168	0.997869	103871933020	662466796	98657551760	95715541930	0.000000	0.005702	0.005131	0.000220	150.000000	699851342	0.998163	0	0.500895	0.006052	0.000000