#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01360/HG01360.cram --algo AlignmentStat 1000G/HG01360/QCmetrics/HG01360.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	372540566	372540566	1.000000	0	372452333	0.999763	55386087086	351817432	52495248348	51716467838	0.000000	0.003752	0.003200	0.000228	150.000000	371557210	0.997597	0	0.500588	0.007139	0.000000	
SECOND_OF_PAIR	372540566	372540566	1.000000	0	371606296	0.997492	55012768577	348344243	51943875806	51128182009	0.000000	0.003990	0.003336	0.000236	150.000000	371557210	0.999868	0	0.501170	0.007273	0.000000	
PAIR	745081132	745081132	1.000000	0	744058629	0.998628	110398855663	700161675	104439124154	102844649847	0.000000	0.003871	0.003267	0.000232	150.000000	743114420	0.998731	0	0.500879	0.007206	0.000000