#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01365/HG01365.cram --algo AlignmentStat 1000G/HG01365/QCmetrics/HG01365.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387530782	387530782	1.000000	0	387448275	0.999787	57606079236	363450285	54234529269	53486299222	0.000000	0.003806	0.003140	0.000234	150.000000	386521852	0.997609	0	0.500501	0.006528	0.000000	
SECOND_OF_PAIR	387530782	387530782	1.000000	0	386569258	0.997519	57191200515	360136412	53667846796	52637504529	0.000000	0.004601	0.003837	0.000239	150.000000	386521852	0.999877	0	0.500945	0.006656	0.000000	
PAIR	775061564	775061564	1.000000	0	774017533	0.998653	114797279751	723586697	107902376065	106123803751	0.000000	0.004202	0.003487	0.000236	150.000000	773043704	0.998742	0	0.500723	0.006592	0.000000