#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01375/HG01375.cram --algo AlignmentStat 1000G/HG01375/QCmetrics/HG01375.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	366675783	366675783	1.000000	0	366568126	0.999706	54439982983	346488601	51652742230	50746143641	0.000000	0.003997	0.003459	0.000224	150.000000	365594329	0.997343	0	0.500616	0.005749	0.000000	
SECOND_OF_PAIR	366675783	366675783	1.000000	0	365654122	0.997214	54081397754	342923816	51112525977	50208594040	0.000000	0.004119	0.003475	0.000232	150.000000	365594329	0.999836	0	0.501247	0.005836	0.000000	
PAIR	733351566	733351566	1.000000	0	732222248	0.998460	108521380737	689412417	102765268207	100954737681	0.000000	0.004058	0.003467	0.000228	150.000000	731188658	0.998588	0	0.500931	0.005792	0.000000