#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01392/HG01392.cram --algo AlignmentStat 1000G/HG01392/QCmetrics/HG01392.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379240607	379240607	1.000000	0	379161939	0.999793	56364182658	356321216	53183940776	52486903747	0.000000	0.003792	0.003125	0.000239	150.000000	377975682	0.996871	0	0.500535	0.006215	0.000000	
SECOND_OF_PAIR	379240607	379240607	1.000000	0	378012581	0.996762	55767018350	353062971	52481389445	51539582095	0.000000	0.004617	0.003872	0.000241	150.000000	377975682	0.999902	0	0.500643	0.006614	0.000000	
PAIR	758481214	758481214	1.000000	0	757174520	0.998277	112131201008	709384187	105665330221	104026485842	0.000000	0.004202	0.003496	0.000240	150.000000	755951364	0.998385	0	0.500588	0.006414	0.000000