#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01393/HG01393.cram --algo AlignmentStat 1000G/HG01393/QCmetrics/HG01393.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	345065055	345065055	1.000000	0	344996442	0.999801	51277454597	326097167	48643325790	48007253425	0.000000	0.003440	0.002889	0.000232	150.000000	344312736	0.998018	0	0.500471	0.005463	0.000000	
SECOND_OF_PAIR	345065055	345065055	1.000000	0	344359704	0.997956	51013430378	323713325	48263999024	47448081309	0.000000	0.003902	0.003268	0.000236	150.000000	344312736	0.999864	0	0.500980	0.005577	0.000000	
PAIR	690130110	690130110	1.000000	0	689356146	0.998879	102290884975	649810492	96907324814	95455334734	0.000000	0.003670	0.003078	0.000234	150.000000	688625472	0.998940	0	0.500725	0.005520	0.000000