#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01455/HG01455.cram --algo AlignmentStat 1000G/HG01455/QCmetrics/HG01455.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	357937239	357937239	1.000000	0	357846660	0.999747	53105529010	336646185	50158618751	49294903242	0.000000	0.004137	0.003462	0.000231	150.000000	357138236	0.998020	0	0.500514	0.006918	0.000000	
SECOND_OF_PAIR	357937239	357937239	1.000000	0	357202231	0.997947	52901187240	334282758	49833627589	48981275804	0.000000	0.004168	0.003416	0.000238	150.000000	357138236	0.999821	0	0.500855	0.007073	0.000000	
PAIR	715874478	715874478	1.000000	0	715048891	0.998847	106006716250	670928943	99992246340	98276179046	0.000000	0.004153	0.003439	0.000235	150.000000	714276472	0.998920	0	0.500684	0.006996	0.000000