#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01459/HG01459.cram --algo AlignmentStat 1000G/HG01459/QCmetrics/HG01459.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367972878	367972878	1.000000	0	367875695	0.999736	54583492712	347885476	51836952590	50961435933	0.000000	0.003980	0.003375	0.000235	150.000000	367039313	0.997726	0	0.500486	0.006762	0.000000	
SECOND_OF_PAIR	367972878	367972878	1.000000	0	367105218	0.997642	54316079053	344763475	51399197467	50539929480	0.000000	0.003988	0.003288	0.000243	150.000000	367039313	0.999820	0	0.501296	0.006859	0.000000	
PAIR	735945756	735945756	1.000000	0	734980913	0.998689	108899571765	692648951	103236150057	101501365413	0.000000	0.003984	0.003332	0.000239	150.000000	734078626	0.998772	0	0.500891	0.006810	0.000000