#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01465/HG01465.cram --algo AlignmentStat 1000G/HG01465/QCmetrics/HG01465.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	362588550	362588550	1.000000	0	362499937	0.999756	53902263165	341796555	50999816069	50230158094	0.000000	0.003748	0.003190	0.000226	150.000000	361619917	0.997572	0	0.500646	0.006255	0.000000	
SECOND_OF_PAIR	362588550	362588550	1.000000	0	361667035	0.997459	53530948753	338507590	50469114949	49611798360	0.000000	0.004100	0.003445	0.000233	150.000000	361619917	0.999870	0	0.500947	0.006390	0.000000	
PAIR	725177100	725177100	1.000000	0	724166972	0.998607	107433211918	680304145	101468931018	99841956454	0.000000	0.003923	0.003317	0.000230	150.000000	723239834	0.998720	0	0.500796	0.006322	0.000000