#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01479/HG01479.cram --algo AlignmentStat 1000G/HG01479/QCmetrics/HG01479.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378292598	378292598	1.000000	0	378194622	0.999741	56116136035	354846245	52874224339	52008601022	0.000000	0.004070	0.003373	0.000233	150.000000	377325718	0.997702	0	0.500563	0.006668	0.000000	
SECOND_OF_PAIR	378292598	378292598	1.000000	0	377392777	0.997621	55833895069	351590178	52419263659	51568638286	0.000000	0.004098	0.003302	0.000242	150.000000	377325718	0.999822	0	0.501137	0.006719	0.000000	
PAIR	756585196	756585196	1.000000	0	755587399	0.998681	111950031104	706436423	105293487998	103577239308	0.000000	0.004084	0.003338	0.000238	150.000000	754651436	0.998761	0	0.500849	0.006693	0.000000