#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01494/HG01494.cram --algo AlignmentStat 1000G/HG01494/QCmetrics/HG01494.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	373232299	373232299	1.000000	0	373149451	0.999778	55434031755	350246906	52254131129	51422378808	0.000000	0.003950	0.003231	0.000240	150.000000	372175089	0.997389	0	0.500589	0.006387	0.000000	
SECOND_OF_PAIR	373232299	373232299	1.000000	0	372217549	0.997281	55017170997	346990360	51692968468	50598721662	0.000000	0.004765	0.003947	0.000243	150.000000	372175089	0.999886	0	0.501092	0.006554	0.000000	
PAIR	746464598	746464598	1.000000	0	745367000	0.998530	110451202752	697237266	103947099597	102021100470	0.000000	0.004356	0.003587	0.000241	150.000000	744350178	0.998636	0	0.500840	0.006471	0.000000