#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01501/HG01501.cram --algo AlignmentStat 1000G/HG01501/QCmetrics/HG01501.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	389487273	389487273	1.000000	0	389390890	0.999753	57815883464	368966057	54981823403	54074197717	0.000000	0.003837	0.003317	0.000222	150.000000	388534495	0.997801	0	0.500449	0.007038	0.000000	
SECOND_OF_PAIR	389487273	389487273	1.000000	0	388602836	0.997729	57551438488	365833424	54544258710	53656003322	0.000000	0.003860	0.003249	0.000231	150.000000	388534495	0.999824	0	0.501275	0.007205	0.000000	
PAIR	778974546	778974546	1.000000	0	777993726	0.998741	115367321952	734799481	109526082113	107730201039	0.000000	0.003849	0.003283	0.000227	150.000000	777068990	0.998811	0	0.500861	0.007121	0.000000