#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01504/HG01504.cram --algo AlignmentStat 1000G/HG01504/QCmetrics/HG01504.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	362711201	362711201	1.000000	0	362616450	0.999739	53813003304	341740519	50914946480	50024728264	0.000000	0.004036	0.003454	0.000226	150.000000	361709944	0.997500	0	0.500612	0.006612	0.000000	
SECOND_OF_PAIR	362711201	362711201	1.000000	0	361775463	0.997420	53535830386	338554565	50466503378	49543144081	0.000000	0.004159	0.003470	0.000234	150.000000	361709944	0.999819	0	0.501385	0.006687	0.000000	
PAIR	725422402	725422402	1.000000	0	724391913	0.998579	107348833690	680295084	101381449858	99567872345	0.000000	0.004097	0.003462	0.000230	150.000000	723419888	0.998658	0	0.500998	0.006649	0.000000