#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01509/HG01509.cram --algo AlignmentStat 1000G/HG01509/QCmetrics/HG01509.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	343516702	343516702	1.000000	0	343422431	0.999726	50952578122	322393358	48029214394	47135995575	0.000000	0.004387	0.003690	0.000230	150.000000	342701814	0.997902	0	0.500470	0.006386	0.000000	
SECOND_OF_PAIR	343516702	343516702	1.000000	0	342766323	0.997816	50748723458	319953903	47698519226	46859361378	0.000000	0.004293	0.003517	0.000237	150.000000	342701814	0.999812	0	0.500935	0.006454	0.000000	
PAIR	687033404	687033404	1.000000	0	686188754	0.998771	101701301580	642347261	95727733620	93995356953	0.000000	0.004340	0.003604	0.000234	150.000000	685403628	0.998856	0	0.500702	0.006420	0.000000