#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01515/HG01515.cram --algo AlignmentStat 1000G/HG01515/QCmetrics/HG01515.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	356747216	356747216	1.000000	0	356651830	0.999733	52906273577	335557948	49989236631	49136775056	0.000000	0.004148	0.003480	0.000234	150.000000	355796422	0.997602	0	0.500523	0.007316	0.000000	
SECOND_OF_PAIR	356747216	356747216	1.000000	0	355861736	0.997518	52615142761	332194960	49514596605	48720676892	0.000000	0.004077	0.003305	0.000243	150.000000	355796422	0.999816	0	0.501268	0.007476	0.000000	
PAIR	713494432	713494432	1.000000	0	712513566	0.998625	105521416338	667752908	99503833236	97857451948	0.000000	0.004113	0.003393	0.000238	150.000000	711592844	0.998708	0	0.500895	0.007396	0.000000