#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01528/HG01528.cram --algo AlignmentStat 1000G/HG01528/QCmetrics/HG01528.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	361857847	361857847	1.000000	0	361764558	0.999742	53701900156	342446585	51026500616	50168762696	0.000000	0.003943	0.003391	0.000225	150.000000	360872655	0.997535	0	0.500508	0.007010	0.000000	
SECOND_OF_PAIR	361857847	361857847	1.000000	0	360937582	0.997457	53407119219	339034033	50545314880	49708323722	0.000000	0.003949	0.003291	0.000234	150.000000	360872655	0.999820	0	0.501443	0.007125	0.000000	
PAIR	723715694	723715694	1.000000	0	722702140	0.998600	107109019375	681480618	101571815496	99877086418	0.000000	0.003946	0.003341	0.000230	150.000000	721745310	0.998676	0	0.500975	0.007067	0.000000