#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01530/HG01530.cram --algo AlignmentStat 1000G/HG01530/QCmetrics/HG01530.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	366054367	366054367	1.000000	0	365951460	0.999719	54300130306	343326027	51152217190	50298722159	0.000000	0.004057	0.003400	0.000231	150.000000	365136620	0.997773	0	0.500626	0.006057	0.000000	
SECOND_OF_PAIR	366054367	366054367	1.000000	0	365202444	0.997673	54054788171	340625223	50767022358	49809952420	0.000000	0.004337	0.003585	0.000237	150.000000	365136620	0.999820	0	0.501082	0.006108	0.000000	
PAIR	732108734	732108734	1.000000	0	731153904	0.998696	108354918477	683951250	101919239548	100108674579	0.000000	0.004196	0.003492	0.000234	150.000000	730273240	0.998796	0	0.500853	0.006082	0.000000