#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01583/HG01583.cram --algo AlignmentStat 1000G/HG01583/QCmetrics/HG01583.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	403865979	403865979	1.000000	0	403747802	0.999707	59973834185	379796571	56625329790	55733013938	0.000000	0.003930	0.003318	0.000234	150.000000	402833970	0.997737	0	0.500508	0.007205	0.000000	
SECOND_OF_PAIR	403865979	403865979	1.000000	0	402899047	0.997606	59633758670	376392817	56111723669	55193530470	0.000000	0.004043	0.003339	0.000242	150.000000	402833970	0.999838	0	0.501090	0.007358	0.000000	
PAIR	807731958	807731958	1.000000	0	806646849	0.998657	119607592855	756189388	112737053459	110926544408	0.000000	0.003986	0.003328	0.000238	150.000000	805667940	0.998786	0	0.500799	0.007281	0.000000