#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01599/HG01599.cram --algo AlignmentStat 1000G/HG01599/QCmetrics/HG01599.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	402089081	402089081	1.000000	0	401989195	0.999752	59758032295	378150071	56393419946	55517980905	0.000000	0.003739	0.003223	0.000225	150.000000	401132798	0.997870	0	0.500590	0.005877	0.000000	
SECOND_OF_PAIR	402089081	402089081	1.000000	0	401194395	0.997775	59457625912	375082723	55936221970	55024305874	0.000000	0.003867	0.003265	0.000232	150.000000	401132798	0.999846	0	0.500931	0.005978	0.000000	
PAIR	804178162	804178162	1.000000	0	803183590	0.998763	119215658207	753232794	112329641916	110542286779	0.000000	0.003803	0.003244	0.000228	150.000000	802265596	0.998857	0	0.500760	0.005928	0.000000