#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01603/HG01603.cram --algo AlignmentStat 1000G/HG01603/QCmetrics/HG01603.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	365278416	365278416	1.000000	0	365190741	0.999760	54160510529	342878590	51083561808	50236150882	0.000000	0.004116	0.003401	0.000234	150.000000	364359963	0.997725	0	0.500432	0.006681	0.000000	
SECOND_OF_PAIR	365278416	365278416	1.000000	0	364424992	0.997664	53912007710	340104802	50689950020	49775025637	0.000000	0.004313	0.003508	0.000240	150.000000	364359963	0.999822	0	0.501275	0.006737	0.000000	
PAIR	730556832	730556832	1.000000	0	729615733	0.998712	108072518239	682983392	101773511828	100011176519	0.000000	0.004215	0.003454	0.000237	150.000000	728719926	0.998772	0	0.500853	0.006709	0.000000