#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01606/HG01606.cram --algo AlignmentStat 1000G/HG01606/QCmetrics/HG01606.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	346466704	346466704	1.000000	0	346379525	0.999748	51388993891	325702170	48524217064	47710159229	0.000000	0.004091	0.003419	0.000227	150.000000	345594896	0.997735	0	0.500453	0.006707	0.000000	
SECOND_OF_PAIR	346466704	346466704	1.000000	0	345659290	0.997670	51147624033	322805029	48125776436	47344491415	0.000000	0.004043	0.003274	0.000236	150.000000	345594896	0.999814	0	0.501261	0.006775	0.000000	
PAIR	692933408	692933408	1.000000	0	692038815	0.998709	102536617924	648507199	96649993500	95054650644	0.000000	0.004067	0.003347	0.000232	150.000000	691189792	0.998773	0	0.500856	0.006741	0.000000