#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01632/HG01632.cram --algo AlignmentStat 1000G/HG01632/QCmetrics/HG01632.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355429790	355429790	1.000000	0	355297034	0.999626	52736456188	335567132	50001431624	49161692793	0.000000	0.003915	0.003365	0.000225	150.000000	354457065	0.997636	0	0.500506	0.007008	0.000000	
SECOND_OF_PAIR	355429790	355429790	1.000000	0	354527389	0.997461	52478844387	332594415	49582480541	48713888229	0.000000	0.004022	0.003371	0.000233	150.000000	354457065	0.999802	0	0.501369	0.007125	0.000000	
PAIR	710859580	710859580	1.000000	0	709824423	0.998544	105215300575	668161547	99583912165	97875581022	0.000000	0.003968	0.003368	0.000229	150.000000	708914130	0.998718	0	0.500937	0.007067	0.000000