#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01668/HG01668.cram --algo AlignmentStat 1000G/HG01668/QCmetrics/HG01668.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	366800229	366800229	1.000000	0	366712110	0.999760	54461330841	346001225	51566624418	50692419651	0.000000	0.003977	0.003425	0.000224	150.000000	365947723	0.997916	0	0.500609	0.006576	0.000000	
SECOND_OF_PAIR	366800229	366800229	1.000000	0	366010413	0.997847	54200560574	342860014	51136225234	50403227240	0.000000	0.003714	0.003068	0.000233	150.000000	365947723	0.999829	0	0.500822	0.006643	0.000000	
PAIR	733600458	733600458	1.000000	0	732722523	0.998803	108661891415	688861239	102702849652	101095646891	0.000000	0.003846	0.003247	0.000229	150.000000	731895446	0.998871	0	0.500715	0.006610	0.000000