#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG01669/HG01669.cram --algo AlignmentStat 1000G/HG01669/QCmetrics/HG01669.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	361190494	361190494	1.000000	0	360880228	0.999141	53508429109	338808100	50469968752	49531824350	0.000000	0.004410	0.003677	0.000237	150.000000	359923502	0.997349	0	0.500567	0.007034	0.000000	
SECOND_OF_PAIR	361190494	361190494	1.000000	0	359988119	0.996671	53183132109	335579718	49984076650	48984200738	0.000000	0.004690	0.003851	0.000245	150.000000	359923502	0.999821	0	0.501343	0.007140	0.000000	
PAIR	722380988	722380988	1.000000	0	720868347	0.997906	106691561218	674387818	100454045402	98516025088	0.000000	0.004550	0.003763	0.000241	150.000000	719847004	0.998583	0	0.500954	0.007087	0.000000